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Medusa: Coordinate Free Meshless Method implementation
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== MathJax ==
== MathJax ==
<nomathjax>User either $ $ or \( \) for inline math and $$ $$ or \[ \] for display style math. You can also use environments, such as align, align*, equation.
<nomathjax>User either $ $ or \( \) for inline math and $$ $$ or \[ \] for display style math. You can also use environments, such as align, align*, equation.
Equations within numbered environments may be labeled with \label and referenced with \ref or, better, \eqref.</nomathjax>
Equations within numbered environments may be labeled with \label and referenced with \ref or, better, \eqref.
All numbers in text should be in $ $, e.g. $100$ m, $35$ kg.</nomathjax>


=== New commands ===
=== New commands ===
Line 16: Line 17:
We have a script that [https://gitlab.com/e62Lab/e62numcodes/blob/master/scripts/backup_wiki_static.sh copies wiki as static pages]. It is located in <code>scripts/</code> folder in our repo.
We have a script that [https://gitlab.com/e62Lab/e62numcodes/blob/master/scripts/backup_wiki_static.sh copies wiki as static pages]. It is located in <code>scripts/</code> folder in our repo.
It can be run directly or by going into your build folder and running <code>make static_wiki</code>.
It can be run directly or by going into your build folder and running <code>make static_wiki</code>.
==References==
How to use multiple use of the same footnote
https://www.mediawiki.org/wiki/Extension:Cite#Multiple_uses_of_the_same_footnote


==Adding figures==
==Adding figures==
There is a drop option to upload an image. To actually insert it in the article (wanting to refer to it later) use the following example
There is a drag&drop option to upload an image. To actually insert it in the article (wanting to refer to it later) use the following example


<syntaxhighlight lang="html" line>
<syntaxhighlight lang="html" line>
Line 30: Line 35:
<xr id="fig:my_figure_label"/>
<xr id="fig:my_figure_label"/>
</syntaxhighlight>
</syntaxhighlight>
== adding code snippets ==
Copyable C++ code for closed form solution:
<syntaxhighlight lang="c++" line>
std::function<Vec2d(Vec2d)> analytical = [=](const Vec2d& p) {
    double x = p[0], y = p[1], r2 = x*x + y*y, factor = -force / (4.0*M_PI*mu);
    double ux = 2*x*y/r2 + 2*mu/(lam + mu)*std::atan2(y, x);
    double uy = (y*y-x*x)/r2 - (lam + 2*mu)/(lam + mu)*std::log(r2);
    return Vec2d(factor*ux, factor*uy);
};
</syntaxhighlight>
Copyable Matlab code for closed form solution:
<syntaxhighlight lang="matlab" line>
function [ux, uy] = point_contact_analytical(x, y, lam, mu, P)
% Evaluates closed form solution for point contact.
% lam and mu are Lame parameters, P is the point force magnitude
r2 = x.^2 + y.^2; factor = -P / (4.0*pi*mu);
ux = factor*(2*x.*y./r2 + 2*mu/(lam + mu)*atan2(y, x));
uy = factor*((y.^2-x.^2)./r2 - (lam + 2*mu)/(lam + mu)*log(r2));
end
</syntaxhighlight>
=== Wiki backup guide ===
This guide covers two ways to backup this wiki, either as html files, only for viewing, or creating a complete backup of the underlying system.
== Backup as static files ==
This scrapes our wiki for html pages and saves them to ninestein <strong>home/mmachine/mm_wiki_backup/</strong>. The [https://gitlab.com/e62Lab/e62numcodes/blob/master/scripts/backup_wiki_static.sh script] is in our scripts directory.
It can be run with
  make static_wiki
from the usual <code>build/</code> folder.
The script runs for a few minutes and back up the relevant part of the wiki.
== Full mediawiki backup ==
The script for this is located in
/var/www/html/ParallelAndDistributedSystems/MeshlessMachine/full_wiki_backup.sh
and runs weekly as a cron job.
To edit the cron job run
  crontab -e
while logged in as the mmachine user. The backup is copied to ninestein home/mmachine. Last 5 backups are stored, and this number can be changed in the script.
To backup manually, run the script and download the backup from ninestein.

Latest revision as of 14:06, 5 October 2017

MathJax

<nomathjax>User either $ $ or \( \) for inline math and $$ $$ or \[ \] for display style math. You can also use environments, such as align, align*, equation. Equations within numbered environments may be labeled with \label and referenced with \ref or, better, \eqref. All numbers in text should be in $ $, e.g. $100$ m, $35$ kg.</nomathjax>

New commands

New $\LaTeX$ command for the current document can be defined using \newcommand. Globally, commands can be added as macros in the wiki/MathJax/config/default.js file around line 544.

Defined commands:

  • \N, \Z, \Q, \R, \C for basic sets $\N, \Z, \Q, \R, \C$
  • \T for matrix transpose $A^\T$.
  • \b{x} for bold symbols (including greek letters $\b{\alpha}$.

Static pages

We have a script that copies wiki as static pages. It is located in scripts/ folder in our repo. It can be run directly or by going into your build folder and running make static_wiki.

References

How to use multiple use of the same footnote https://www.mediawiki.org/wiki/Extension:Cite#Multiple_uses_of_the_same_footnote

Adding figures

There is a drag&drop option to upload an image. To actually insert it in the article (wanting to refer to it later) use the following example

<figure id="fig:my_figure_label">
[[File:name_of_my_figure.png|thumb|upright=2|alt=An alternative text, that appears if the figure cannot be shown|<caption>The caption under the figure</caption>]]
</figure>

To make a reference to the image, use the code

<xr id="fig:my_figure_label"/>

adding code snippets

Copyable C++ code for closed form solution:

std::function<Vec2d(Vec2d)> analytical = [=](const Vec2d& p) {
    double x = p[0], y = p[1], r2 = x*x + y*y, factor = -force / (4.0*M_PI*mu);
    double ux = 2*x*y/r2 + 2*mu/(lam + mu)*std::atan2(y, x);
    double uy = (y*y-x*x)/r2 - (lam + 2*mu)/(lam + mu)*std::log(r2);
    return Vec2d(factor*ux, factor*uy);
};

Copyable Matlab code for closed form solution:

function [ux, uy] = point_contact_analytical(x, y, lam, mu, P)
% Evaluates closed form solution for point contact.
% lam and mu are Lame parameters, P is the point force magnitude
r2 = x.^2 + y.^2; factor = -P / (4.0*pi*mu);
ux = factor*(2*x.*y./r2 + 2*mu/(lam + mu)*atan2(y, x));
uy = factor*((y.^2-x.^2)./r2 - (lam + 2*mu)/(lam + mu)*log(r2));
end

Wiki backup guide

This guide covers two ways to backup this wiki, either as html files, only for viewing, or creating a complete backup of the underlying system.

Backup as static files

This scrapes our wiki for html pages and saves them to ninestein home/mmachine/mm_wiki_backup/. The script is in our scripts directory. It can be run with

 make static_wiki

from the usual build/ folder. The script runs for a few minutes and back up the relevant part of the wiki.

Full mediawiki backup

The script for this is located in

/var/www/html/ParallelAndDistributedSystems/MeshlessMachine/full_wiki_backup.sh

and runs weekly as a cron job. To edit the cron job run

 crontab -e

while logged in as the mmachine user. The backup is copied to ninestein home/mmachine. Last 5 backups are stored, and this number can be changed in the script. To backup manually, run the script and download the backup from ninestein.