Latest revision as of 20:36, 6 October 2017

Solving Diffusion equation

For starters, we can solve simple Diffusion equation $ \nabla^2 u = \frac{\partial u}{\partial t} $.

We solved the equation on a square $\Omega = [0, a] \times [0, a]$ with Dirichlet boundary conditions $ \left. u\right|_{\partial \Omega} = 0 $ and initial state $ u(t = 0) = 1$.

An analytical solution for this domain is known, and we use it to evaluate or own solution. \begin{equation} u(\vec{p}, t) = \sum_{\substack{n=1 \\ n \text{ odd}}}^\infty\sum_{\substack{m=1 \\ m \text{ odd}}}^\infty \frac{1}{\pi^2} \frac{16 a^2}{nm} \sin\left(\frac{\pi n}{a}p_x\right) \sin\left(\frac{\pi m}{a}p_y\right) e^{-\frac{\pi^2 (n^2+m^2)}{a^2}t} \end{equation} Because the solution is given in the series form, we only compare to the finite approximation, summing to $N = 100$ instead of infinity. Solution is on Figure 1. See the code for solving diffusion here.

Figure 1: A picture of our solution (with smaller and larger node density)

Convergence with respect to number of nodes

Figure 2: Convergence with respect to number of nodes

We tested the method with a fixed time step of $ \Delta t = 1\cdot 10^{-5}$ on a unit square ($a = 1$). Results are on Figure 2. Monomial basis of $6$ monomials was used and $12$ closest nodes counted as support for each node. After more than $250$ nodes of discretization in each dimension the method diverges, which is expected. The stability criterion for diffusion equation in two dimensions is $\Delta t \leq \frac{1}{4} \Delta x^2$, where $\Delta x$ is the spatial discretization step in one dimension. In our case, at $250$ nodes per side, the right hand side yields $\frac{1}{4}\cdot\frac{1}{250}\cdot\frac{1}{250} = 4\times 10^{-6}$, so our method is stable within the expected region.

Figure 3: Convergence with respect to number of nodes for Gaussian and Monomial basis

On Figure 3 is another image of convergence, this time using monomial basis $\{1, x, y, x^2, y^2\}$ and Gaussian basis with discretization step $ \Delta t = 5 \cdot 10^{-6}$ and 5 support nodes. Total node count was $N = 2500$. Error was calculated after $0.01$ time units have elapsed.

Figure 4: Convergence with respect to number of nodes for explicit and implicit mixed boundary condition (Neumann is enforced in two different ways).

Figure 4 shows convergence of 1/4 of the whole solution with Dirichlet boundary conditions (Fig. 1). The nodes were spanning the area $[0, a/2]^2$. As expected, higher number of nodes yields lower max error up to some maximal number of nodes. The latter is lower for explicit than for implicit method.

Convergence with respect to number of time steps

Figure 5: Convergence with respect to different timesteps

We tested the method on a fixed node count with different time steps on the same domain as above. Results are on Figure 5. For large time steps the method diverges, but once it starts converging the precision increases steadily as the time step decreases, until it hits its lower limit. This behaviour is expected. The error was calculated against the analytical solution above after $0.005$ units of time have passed. A monomial basis up to order $2$ inclusive ($m = 6$) was used and the support size was $n = 12$.

Using Gaussian basis

Figure 6: Graph of error with respect to Gaussian basis $\sigma$

We tested the method on a fixed node count of $N = 2500$ with spatial step discretization of $\Delta x = \frac{1}{50}$. We used the Gaussian basis of $m = 5$ functions with support size $n = 13$. Error was calculated against analytical solution above after $0.01$ time units. A time step of $\Delta t = 10^{-5}$ was used. Results are on Figure 6

As we can see from the graph, there exists an interval where the choice of $\sigma$ does not matter much, but outside of this interval, the method diverges rapidly. Care from the user side must be taken, to choose $\sigma$ appropriately, with respect to plot above.

Convergence with respect to shape parameters

Choice of shape of the basis function can have significant effect on solution of the system. We tested the space of feasible shape parameters on the diffusion equation with $\Delta x = \Delta y = 0.01$ and $m = n = 9$. The weight function does not have much influence here, except on the condition number and any singular values that get cut off because of that.

Results for Gaussian, MQ and IMQ basis functions are presented in Figure 7, Figure 8 and Figure 10.

Figure 7: Error as a function of Gaussian basis' $\sigma_B$ and Gaussian weight's $\sigma_W$

Figure 8: Error as a function of MQ basis' $\sigma_B$ and Gaussian weight's $\sigma_W$

Figure 9: Error as a function of IMQ basis' $\sigma_B$ and Gaussian weight's $\sigma_W$

Figure 10: Error as a function of Gaussian weight's $\sigma_W$ for Monomials of order 2.

Solving in 3D

A 3-dimensional case on domain $[0, 1]^3$ was tested on $N = 20^3$ nodes, making the discretization step $\Delta x = 0.05$. Support size of $n=10$ with $m=10$ Gaussian basis functions was used. Their normalization parameter was $\sigma = 60\Delta x$. A time step of $\Delta t = 10^{-5}$ and an explicit Euler method was used to calculate the solution of to $0.01$ time units. Resulting function is on Figure 11.

Figure 11: A $ 3 $-dimensional soulution with an explicit Euler method

Solving mixed boundary conditions with MLSM operators

By using MLSM operators and utilizing its `MLSM::neumann` method we can also solve partial diffusion equations. Solution is on Figure 12.

Figure 12: Example of solving using Neumann boundary conditions

Example code showing the use of Neumann boundary conditions: example code

Different geometries

We also support more -- interesting -- domains :) On Figure 13, Figure 14 and Figure 15 we see a solution to $\triangle u = 1$ with zero boundary conditions on more interesting geometries.

Figure 13: Miki mouse domain

Figure 14: Domain 2

Figure 15: Domain 3

Solving Electrostatics

This example is taken from the FreeFem++ manual (page 235).

Assuming there is no current and the charge distribution is time independent, the electric field $\b{E}$ satisfies \begin{equation}\label{eq:electrostatics} \b{\nabla}\cdot\b{E} = \frac{\rho}{\epsilon}, \quad \b{\nabla} \times \b{E} = 0 \end{equation} where $\rho$ is the charge density and $\epsilon$ is the permittivity. If we introduce an electrostatics potential $\phi$ such that \begin{equation} \b{E} = -\b{\nabla}\phi, \end{equation} we can insert it into the first equation in (\ref{eq:electrostatics}) resulting in Poisson's equation \begin{equation}\label{eq:poisson} \b{\nabla}^2 \phi = -\frac{\rho}{\epsilon}. \end{equation} In the absence of unpaired electric charge equation (\ref{eq:poisson}) becomes Laplace's equation \begin{equation} \b{\nabla}^2 \phi = 0 \end{equation}

We now solve this equation for a circular enclosure with two rectangular holes. The boundary of the circular enclosure is held at constant potential $0$ V. The two rectangular holes are held at constant potentials $+1$ V and $-1$ V, respectively. A coloured scatter plot is available in figure Figure 16.

 1     // domain parameters, size, support and monomial order
 2     int domain_size = 3000;
 3     size_t n = 15; 
 4     size_t m = 3; 
 5 
 6     double radius = 5.0;
 7     double width = 0.3;
 8     double height = 3.0;
 9 
10     // extra boundary labels
11     int LEFT = -10;
12     int RIGHT = -20;
13 
14     // build circular domain
15     CircleDomain<Vec2d> domain({0,0},radius);
16     domain.fillUniformInterior(domain_size);
17     domain.fillUniformBoundaryWithStep(domain.characteristicDistance());
18 
19     // build left rectangle
20     RectangleDomain<Vec2d> left({-2-width,-height},{-2+width,height});
21     left.fillUniformBoundaryWithStep(domain.characteristicDistance());
22     left.types[left.types == BOUNDARY] = LEFT;
23     domain.subtract(left);
24 
25     // build right rectangle
26     RectangleDomain<Vec2d> right({2-width,-height},{2+width,height});
27     right.fillUniformBoundaryWithStep(domain.characteristicDistance());
28     right.types[right.types == BOUNDARY] = RIGHT;
29     domain.subtract(right);
30 
31     // relax domain and find supports
32     domain.relax(50, 1e-2, 1.0, 3, 1000);
33     domain.findSupport(n);
34 
35     // get interior and boundary ranges
36     Range<int> interior = domain.types == INTERNAL;
37     Range<int> boundary = domain.types == BOUNDARY;
38     Range<int> leftrect = domain.types == LEFT;
39     Range<int> rightrect = domain.types == RIGHT;
40 
41     // initialize unknown concentration field and right-hand side
42     VecXd phi(domain.size(),1);
43     VecXd RHS(domain.size(),1);
44 
45     // initialize interior values (this is an important step)
46     RHS[interior] = 0.0;
47 
48     // set dirichlet boundary conditions
49     RHS[boundary] = 0.0;
50     RHS[leftrect] = -1.0;
51     RHS[rightrect] = 1.0;
52 
53     // prepare shape functions and laplacian
54     std::vector<Triplet<double>> l_coeff;
55     for (auto& c : interior) {
56         Range<Vec2d> supp_domain = domain.positions[domain.support[c]];
57         EngineMLS<Vec2d, Monomials, Gaussians> MLS(m,supp_domain,pow(domain.characteristicDistance(),2));
58         VecXd shape = MLS.getShapeAt(supp_domain[0], {{2, 0}}) +
59                       MLS.getShapeAt(supp_domain[0], {{0, 2}});
60         for (size_t i = 0; i < supp_domain.size(); ++i) {
61             l_coeff.emplace_back(c, domain.support[c][i], shape[i]);
62         }
63     }
64 
65     // prepare dirichlet boundaries
66     std::vector<Triplet<double>> b_coeff;
67     for (auto& c : domain.types < 0) {
68         b_coeff.emplace_back(c, c, 1.0);
69     }
70 
71     // prepare matrices
72     SparseMatrix<double> laplace_m(domain.size(), domain.size());
73     laplace_m.setFromTriplets(l_coeff.begin(), l_coeff.end());
74     SparseMatrix<double> boundary_m(domain.size(), domain.size());
75     boundary_m.setFromTriplets(b_coeff.begin(), b_coeff.end());
76 
77     // draw
78     std::thread th([&] { draw2D(domain.positions, phi); });
79 
80     // initialize solver
81     Eigen::BiCGSTAB<SparseMatrix<double>> solver;
82 
83     // join matrices together
84     SparseMatrix<double> tmp = boundary_m + laplace_m;
85     solver.compute(tmp);
86 
87     // solve system of equations
88     phi = solver.solve(RHS);
89     std::cout << "#iterations:     " << solver.iterations() << std::endl;
90     std::cout << "estimated error: " << solver.error()      << std::endl;
91 
92     // end drawing
93     th.join();

Figure 16: Simple electrostatics problem solved by implicit method with 15 node monomial supports and gaussian weight functions.

Convection-diffusion

The following example problem is adapted from Ferziger & Perič (2002) (pages 82-86).

Figure 17: Geometry and boundary conditions for the scalar transport in a stagnation point flow.

We now consider the problem of a scalar quantity transported in a known velocity field $\b{u}$. The velocity field is given by \[\b{u} = (u_x,u_y) = (x, -y),\] which represents the flow near a stagnation point $(x,y) = (0,0)$. The streamlines $xy=\mathrm{const.}$ and change direction with respect to the Cartesian grid. The convection-diffusion equation (also known as the scalar transport equation) to be solved is \[\alpha \b{\nabla}^2 \phi - \b{u}\cdot \b{\nabla}\phi = 0\] with the following boundary conditions:

• $\phi = 0$ along the north (inlet) boundary;
• linear variation $\phi = (1 - y)$ along the west boundary ($x = 0$);
• symmetry condition on the south boundary;
• zero gradient at the east (outlet) boundary.

The parameter $\alpha$ is the diffusivity for the scalar quantity $\phi$. The problem and boundary conditions are schematically represented in the Figure 17. The solutions obtained by Ferziger and Perić are shown in Figure 18.

Figure 18: Isolines of $\phi$, from 0.05 to 0.95 with step 0.1 (top to bottom), for $\alpha = 0.01$ (left) and $\alpha = 0.001$ (right).

The meshless solution is obtained on regular point arrangements of sizes 100 × 100 and 300 × 300, for the 2 cases of diffusivity $\alpha = 0.01$ and $\alpha = 0.001$, respectively. For comparison we have plotted the contour lines at the same intervals as the original authors of this example (see Figure 19). The basis functions are the 5 monomials $1$, $x$, $y$, $x^2$, $y^2$.

Figure 19: Isolines of $\phi$, from 0.05 to 0.95 with step 0.1 (top to bottom), for $\alpha = 0.01$ (left) and $\alpha = 0.001$ (right), obtaines with meshless solver.